Machine Learning for Genomics Explorations (MLGenX)


Despite rapid advances in data-driven biology, our limited understanding of the biological mechanisms underlying diseases continues to hinder therapeutic innovation. While genomics and multi-omics platforms have generated vast datasets, translating these into actionable biological insights remains an open challenge. At the same time, the emergence of foundation models and AI agents capable of reasoning, planning, and hypothesis generation offers a unique opportunity to reimagine how we approach discovery in biology. The 3rd MLGenX workshop aims to bring together the machine learning, genomics, and biology communities to explore this new frontier. This year’s theme, From Reasoning to Experimentation: Closing the Loop Between AI Agents and the Biological Lab, focuses on adaptive, interpretable, and experiment-aware AI systems that learn from feedback and drive biological insight. By fostering interdisciplinary collaboration, benchmark sharing, and open discussion, MLGenX 2026 aims to chart the path toward lab-in-the-loop science and accelerate innovation in biology and drug discovery.

Theme (2026): From Reasoning to Experimentation: Closing the Loop Between AI Agents and the Biological Lab




Important Dates

All deadlines are 11:59 pm UTC -12h ("Anywhere on Earth"). All authors must have an OpenReview profile when submitting.

  • Main & Special Track Submission Deadline: February 2, 2026 February 8, 2025
  • Tiny Papers Track Submission Deadline: February 8, 2026
  • Acceptance Notification (all tracks): March 1, 2026
  • Camera-Ready Submission Deadline (all tracks): March 27, 2026
  • Workshop Date: April 27, 2026

Tentative Speakers & Panelists

Charlotte Bunne

Charlotte Bunne

EPFL
Bo Wang

Bo Wang

University of Toronto
Smita Krishnaswamy

Smita Krishnaswamy

Yale University
Kathy Wei

Kathy Wei

310.ai
Hani Goodarzi

Hani Goodarzi

UCSF
James Zou

James Zou

Stanford University
Kyunghyun Cho

Kyunghyun Cho

New York University, Genentech
Catherine Tong

Catherine Tong

Isomorphic Labs

Organizers

Ehsan Hajiramezanali
Ehsan Hajiramezanali
Aviv Regev
Aviv Regev
Fabian Theis
Fabian Theis
Mihaela van der Schaar
Mihaela van der Schaar
Arman Hasanzadeh
Arman Hasanzadeh
Wei Qiu
Wei Qiu
Tommaso Biancalani
Tommaso Biancalani

Acknowledgement

We would also like to appreciate Gabriele Scalia and Aicha BenTaieb for their insightful input, ongoing collaboration, and continued engagement. We also extend our sincere thanks to Barbara Cheifet, Chief Editor of Nature Biotechnology, for her generous help and guidance in establishing the partnership with the journal.